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Abstract Mass spectrometry imaging (MSI) has become an important analytical tool for the label‐free chemical imaging of diverse molecules in biological specimens. This minireview surveys some emerging methods in the context of factors that can lead to inaccurate information in MSI, chemical and spatial aberrations, along with their common sources. Matrix‐assisted laser desorption ionization, based on organic matrices, has become the most widely used MSI technique for biomolecules. However, due to inherent limitations associated with the use of organic matrices, for example, heterogeneous matrix‐analyte cocrystallization, and spectral interferences due to the matrix, laser desorption ionization (LDI) from inorganic and nanophotonic platforms has emerged as an alternative MSI modality with complementary advantages. In this review, inorganic and nanophotonic platforms for LDI‐MSI, their applications in imaging, notable merits, and limitations are described. 

Abstract Mass spectrometry imaging (MSI) enables simultaneous spatial mapping for diverse molecules in biological tissues. Matrix‐assisted laser desorption ionization (MALDI) mass spectrometry (MS) has been a mainstream MSI method for a wide range of biomolecules. However, MALDI‐MSI of biological homopolymers used for energy storage and molecular feedstock is limited by, e.g., preferential ionization for certain molecular classes. Matrix‐free nanophotonic ionization from silicon nanopost arrays (NAPAs) is an emerging laser desorption ionization (LDI) platform with ultra‐trace sensitivity and molecular imaging capabilities. Here, we show complementary analysis and MSI of polyhydroxybutyric acid (PHB), polyglutamic acid (PGA), and polysaccharide oligomers in soybean root nodule sections by NAPA‐LDI and MALDI. For PHB, number and weight average molar mass, polydispersity, and oligomer size distributions across the tissue section and in regions of interest were characterized by NAPA‐LDI‐MSI. 

SUMMARY The establishment of the nitrogen‐fixing symbiosis between soybean andBradyrhizobium japonicumis a complex process. To document the changes in plant metabolism as a result of symbiosis, we utilized laser ablation electrospray ionization‐mass spectrometry (LAESI‐MS) forin situmetabolic profiling of wild‐type nodules, nodules infected with aB. japonicum nifHmutant unable to fix nitrogen, nodules doubly infected by both strains, and nodules formed on plants mutated in thestearoyl‐acyl carrier protein desaturase(sacpd‐c) gene, which were previously shown to have an altered nodule ultrastructure. The results showed that the relative abundance of fatty acids, purines, and lipids was significantly changed in response to the symbiosis. ThenifHmutant nodules had elevated levels of jasmonic acid, correlating with signs of nitrogen deprivation. Nodules resulting from the mixed inoculant displayed similar, overlapping metabolic distributions within the sectors of effective (fix⁺) and ineffective (nifHmutant, fix⁻) endosymbionts. These data are inconsistent with the notion that plant sanctioning is cell autonomous. Nodules lackingsacpd‐cdisplayed an elevation of soyasaponins and organic acids in the central necrotic regions. The present study demonstrates the utility of LAESI‐MS for high‐throughput screening of plant phenotypes. Overall, nodules disrupted in the symbiosis were elevated in metabolites related to plant defense.